hu.MAP 2.0: Complex View
Human Protein Complex Map
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Complex: HuMAP2_05904
Confidence: Extremely High
ProteinsGenename | Protein Name | Links |
---|---|---|
XAB2 | Pre-mRNA-splicing factor SYF1 (Protein HCNP) (XPA-binding protein 2) | UniProt NCBI |
CRNKL1 | Crooked neck-like protein 1 (Crooked neck homolog) (hCrn) | UniProt NCBI |
PPIE | Peptidyl-prolyl cis-trans isomerase E (PPIase E) (EC 5.2.1.8) (Cyclophilin E) (Cyclophilin-33) (Rotamase E) | UniProt NCBI |
ISY1 | Pre-mRNA-splicing factor ISY1 homolog | UniProt NCBI |
AQR | RNA helicase aquarius (EC 3.6.4.13) (Intron-binding protein of 160 kDa) (IBP160) | UniProt NCBI |
Enrichments
Term ID | Corrected Pval | Fraction Complex Coverage | Proteins | Term Name |
---|---|---|---|---|
CORUM:1181 | 2.5735197565e-10 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | C complex spliceosome |
KEGG:03040 | 2.23322702966e-09 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | Spliceosome |
CORUM:351 | 5.08296361811e-09 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | Spliceosome |
REAC:R-HSA-72163 | 3.45105311094e-08 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | mRNA Splicing - Major Pathway |
REAC:R-HSA-72172 | 4.31006066442e-08 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | mRNA Splicing |
REAC:R-HSA-6781823 | 1.06659036688e-07 | 0.8 | ISY1 XAB2 AQR PPIE | Formation of TC-NER Pre-Incision Complex |
REAC:R-HSA-72203 | 1.40345345848e-07 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | Processing of Capped Intron-Containing Pre-mRNA |
REAC:R-HSA-6782210 | 2.31293212985e-07 | 0.8 | ISY1 XAB2 AQR PPIE | Gap-filling DNA repair synthesis and ligation in TC-NER |
GO:0071013 | 2.37847679293e-07 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | catalytic step 2 spliceosome |
REAC:R-HSA-6782135 | 2.46446696587e-07 | 0.8 | ISY1 XAB2 AQR PPIE | Dual incision in TC-NER |
GO:0005684 | 3.80961167992e-07 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | U2-type spliceosomal complex |
REAC:R-HSA-6781827 | 5.1886356556e-07 | 0.8 | ISY1 XAB2 AQR PPIE | Transcription-Coupled Nucleotide Excision Repair (TC-NER) |
REAC:R-HSA-5696398 | 2.09637710842e-06 | 0.8 | ISY1 XAB2 AQR PPIE | Nucleotide Excision Repair |
GO:0071007 | 3.33813219873e-06 | 0.8 | PPIE AQR CRNKL1 XAB2 | U2-type catalytic step 2 spliceosome |
GO:0005681 | 6.93592836046e-06 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | spliceosomal complex |
REAC:R-HSA-8953854 | 2.37148320446e-05 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | Metabolism of RNA |
GO:0006283 | 0.000132272122238 | 0.8 | ISY1 XAB2 AQR PPIE | transcription-coupled nucleotide-excision repair |
REAC:R-HSA-73894 | 0.00015586029631 | 0.8 | ISY1 XAB2 AQR PPIE | DNA Repair |
GO:0000377 | 0.000195429782732 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile |
GO:0000398 | 0.000195429782732 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | mRNA splicing, via spliceosome |
GO:0000375 | 0.000205071070663 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | RNA splicing, via transesterification reactions |
GO:0000974 | 0.000259479548289 | 0.6 | ISY1 CRNKL1 XAB2 | Prp19 complex |
GO:0071014 | 0.000259479548289 | 0.6 | ISY1 CRNKL1 XAB2 | post-mRNA release spliceosomal complex |
GO:0008380 | 0.000460710313953 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | RNA splicing |
GO:0006289 | 0.0005799178998 | 0.8 | ISY1 XAB2 AQR PPIE | nucleotide-excision repair |
GO:0006397 | 0.00066476318296 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | mRNA processing |
GO:0016071 | 0.0124036237668 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | mRNA metabolic process |
GO:1990904 | 0.0163080003193 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | ribonucleoprotein complex |
GO:0006396 | 0.0184779947673 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | RNA processing |
GO:0000393 | 0.0450641792523 | 0.4 | ISY1 XAB2 | spliceosomal conformational changes to generate catalytic conformation |
CORUM:0000000 | 0.0474603483533 | 1.0 | PPIE ISY1 CRNKL1 AQR XAB2 | CORUM root |
Edges
Protein 1 | Protein 2 | Score | Precision | Evidence |
---|---|---|---|---|
ISY1 | AQR | 1.0 | 0.949 | hein_WMM bioplex_WMM Guru Malo fraction |
PPIE | CRNKL1 | 1.0 | 0.949 | hein_WMM bioplex (PPIE) bioplex_WMM Guru youn_WMM hein (CRNKL1) Malo fraction |
CRNKL1 | AQR | 1.0 | 0.949 | hein_WMM bioplex_WMM Guru youn_WMM hein (CRNKL1) Malo gupta_WMM fraction treiber_WMM |
PPIE | XAB2 | 1.0 | 0.949 | hein_WMM bioplex (PPIE) bioplex_WMM Guru youn_WMM Malo fraction |
PPIE | AQR | 1.0 | 0.949 | hein_WMM bioplex (PPIE) bioplex_WMM Guru youn_WMM Malo fraction |
ISY1 | CRNKL1 | 1.0 | 0.949 | hein_WMM bioplex_WMM Guru hein (CRNKL1) Malo fraction |
XAB2 | AQR | 1.0 | 0.949 | hein_WMM bioplex_WMM Guru youn_WMM Malo gupta_WMM fraction treiber_WMM |
CRNKL1 | XAB2 | 1.0 | 0.949 | hein_WMM bioplex_WMM Guru youn_WMM hein (CRNKL1) Malo gupta_WMM fraction treiber_WMM |
PPIE | ISY1 | 1.0 | 0.949 | hein_WMM bioplex (PPIE) bioplex_WMM Guru Malo fraction |
ISY1 | XAB2 | 1.0 | 0.949 | hein_WMM bioplex_WMM Guru Malo fraction |
Images
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Complex HuMAP2_05904 has an average edge precision of 0.949 which is ranked 2 out of all 6965 complexes.
Related Complexes